Abstract
Most statistical developments in the joint modelling area have focused on the shared random-effect models that include characteristics of the longitudinal marker as predictors in the model for the time-to-event. A less well-known approach is the joint latent class model which consists in assuming that a latent class structure entirely captures the correlation between the longitudinal marker trajectory and the risk of the event. Owing to its flexibility in modelling the dependency between the longitudinal marker and the event time, as well as its ability to include covariates, the joint latent class model may be particularly suited for prediction problems. This article aims at giving an overview of joint latent class modelling, especially in the prediction context. The authors introduce the model, discuss estimation and goodness-of-fit, and compare it with the shared random-effect model. Then, dynamic predictive tools derived from joint latent class models, as well as measures to evaluate their dynamic predictive accuracy, are presented. A detailed illustration of the methods is given in the context of the prediction of prostate cancer recurrence after radiation therapy based on repeated measures of Prostate Specific Antigen.
References
| 1. | Wulfsohn, MS, Tsiatis, AA. A joint model for survival and longitudinal data measured with error. Biometrics 1997; 53(1): 330–339. Google Scholar | Crossref | Medline | ISI |
| 2. | Proust-Lima, C, Taylor, JMG. Development and validation of a dynamic prognostic tool for prostate cancer recurrence using repeated measures of post-treatment PSA: a joint modelling approach. Biostatistics 2009; 10: 535–549. Google Scholar | Crossref | Medline | ISI |
| 3. | Yu, M, Taylor, JMG, Sandler, HM. Individual prediction in prostate cancer studies using a joint longitudinal survival-cure model. J Am Stat Assoc 2008; 103: 178–187. Google Scholar | Crossref | ISI |
| 4. | Prentice, RL . Covariate measurement errors and parameter estimation in cox's failure time regression model. Biometrika 1982; 69(2): 331–342. Google Scholar | Crossref | ISI |
| 5. | Taylor, JMG, Yu, M, Sandler, HM. Individualized predictions of disease progression following radiation therapy for prostate cancer. J Clin Oncol 2005; 23(4): 816–825. Google Scholar | Crossref | Medline | ISI |
| 6. | Henderson, R, Diggle, P, Dobson, A. Joint modelling of longitudinal measurements and event time data. Biostatistics 2000; 1(4): 465–480. Google Scholar | Crossref | Medline |
| 7. | Rizopoulos, D . Dynamic predictions and prospective accuracy in joint models for longitudinal and time-to-event data. Biometrics 2011; 67(3): 819–829. Google Scholar | Crossref | Medline | ISI |
| 8. | Huang, X, Li, G, Elashoff, RM, Pan, J. A general joint model for longitudinal measurements and competing risks survival data with heterogeneous random effects. Lifetime Data Anal 2011; 17(1): 80–100. Google Scholar | Crossref | Medline | ISI |
| 9. | Rizopoulos, D, Ghosh, P. A bayesian semiparametric multivariate joint model for multiple longitudinal outcomes and a time-to-event. Stat Med 2011; 30(12): 1366–1380. Google Scholar | Crossref | Medline | ISI |
| 10. | Vermunt, JK, Magidson, J. Latent class models for classification. Comput Stat Data Anal 2003; 41(3-4): 531–537. Google Scholar | Crossref | ISI |
| 11. | Lin, H, Turnbull, BW, McCulloch, CE, Slate, EH. Latent class models for joint analysis of longitudinal biomarker and event process data: application to longitudinal prostate-specific antigen readings and prostate cancer. J Am Stat Assoc 2002; 97: 53–65. Google Scholar | Crossref | ISI |
| 12. | Proust-Lima, C, Joly, P, Jacqmin-Gadda, H. Joint modelling of multivariate longitudinal outcomes and a time-to-event: a nonlinear latent class approach. Comput Stat Data Anal 2009; 53(4): 1142–1154. Google Scholar | Crossref | ISI |
| 13. | Garre, FG, Zwinderman, AH, Geskus, RB, Sijpkens, YWJ. A joint latent class changepoint model to improve the prediction of time to graft failure. J Roy Stat Soc Ser A 2008; 171(1): 299–308. Google Scholar |
| 14. | Beunckens, C, Molenberghs, G, Verbeke, G, Mallinckrodt, C. A latent-class mixture model for incomplete longitudinal gaussian data. Biometrics 2008; 64(1): 96–105. Google Scholar | Crossref | Medline | ISI |
| 15. | Dantan, E, Proust-Lima, C, Letenneur, L, Jacqmin-Gadda, H. Pattern mixture models and latent class models for the analysis of multivariate longitudinal data with informative dropouts. Int J Biostat 2008; 4. Article 14. Google Scholar | Crossref | Medline |
| 16. | Zhang, S, Müller, P, Do, KA. A Bayesian semi-parametric survival model with longitudinal markers. Biometrics 2010; 66(2): 435–443. Google Scholar | Crossref | Medline | ISI |
| 17. | Diggle, PJ, Sousa, I, Chetwynd, AG. Joint modelling of repeated measurements and time-to-event outcomes: the fourth Armitage lecture. Stat Med 2008; 27(16): 2981–2998. Google Scholar | Crossref | Medline | ISI |
| 18. | Laird, NM, Ware, JH. Randomeffects models for longitudinal data. Biometrics 1982; 38: 963–974. Google Scholar | Crossref | Medline | ISI |
| 19. | Marquardt, D . An algorithm for leastsquares estimation of nonlinear parameters. SIAM J Appl Math 1963; 11: 431–441. Google Scholar | Crossref | ISI |
| 20. | Stephens, M . Dealing with label switching in mixture models. J Roy Stat Soc Ser B 2000; 62(4): 795–809. Google Scholar | Crossref |
| 21. | Redner, RA, Walker, FH. Mixture densities, maximum likelihood and the EM algorithm. SIAM Rev 1984; 26(2): 195–239. Google Scholar | Crossref | ISI |
| 22. | Hipp, JR, Bauer, DJ. Local solutions in the estimation of growth mixture models. Psychol Meth 2006; 11: 36–53. Google Scholar | Crossref | Medline | ISI |
| 23. | Biernacki, C, Celeux, G, Govaert, G. Choosing starting values for the EM algorithm for getting the highest likelihood in multivariate Gaussian mixture models. Comput Stat Data Anal 2003; 41(3-4): 561–575. Google Scholar | Crossref | ISI |
| 24. | Hawkins, DS, Allen, DM, Stromberg, AJ. Determining the number of components in mixtures of linear models. Comput Stat Data Anal 2001; 38(1): 15–48. Google Scholar | Crossref | ISI |
| 25. | Han, J, Slate, EH, Pena, EA. Parametric latent class joint model for a longitudinal biomarker and recurrent events. Stat Med 2007; 26(29): 5285–5302. Google Scholar | Crossref | Medline | ISI |
| 26. | Rizopoulos, D . JM: An R package for the joint modelling of longitudinal and time-to-event data. J Stat Softw 2010; 35(9): 1–33. Google Scholar | Crossref | Medline | ISI |
| 27. | Dobson, A, Henderson, R. Diagnostics for joint longitudinal and dropout time modeling. Biometrics 2003; 59: 741–751. Google Scholar | Crossref | Medline | ISI |
| 28. | Lin, H, McCulloch, CE, Rosenheck, RA. Latent pattern mixture models for informative intermittent missing data in longitudinal studies. Biometrics 2004; 60(2): 295–305. Google Scholar | Crossref | Medline | ISI |
| 29. | Jacqmin-Gadda, H, Proust-Lima, C, Taylor, JMG, Commenges, D. Score test for conditional independence between longitudinal outcome and time to event given the classes in the joint latent class model. Biometrics 2010; 66(1): 11–19. Google Scholar | Crossref | Medline | ISI |
| 30. | Muthén, B, Brown, CH, Masyn, K. General growth mixture modeling for randomized preventive interventions. Biostatistics 2002; 3(4): 459–475. Google Scholar | Crossref | Medline | ISI |
| 31. | Rizopoulos, D, Verbeke, G, Molenberghs, G. Multiple-imputation-based residuals and diagnostic plots for joint models of longitudinal and survival outcomes. Biometrics 2010; 66(1): 20–29. Google Scholar | Crossref | Medline | ISI |
| 32. | Henderson, R, Diggle, P, Dobson, A. Identification and efficacy of longitudinal markers for survival. Biostatistics 2002; 3(1): 33–50. Google Scholar | Crossref | Medline | ISI |
| 33. | Schoop, R, Schumacher, M, Graf, E. Measures of prediction error for survival data with longitudinal covariates. Biometrical J 2011; 53(2): 275–293. Google Scholar | Crossref | Medline | ISI |
| 34. | Commenges, D, Liquet, B, Proust-Lima, C. Choice of prognostic estimators in joint models by estimating differences of expected conditional Kullback-Leibler risks. Biometrics 2012. (in press. Google Scholar | Crossref | ISI |
| 35. | Gerds, TA, Schumacher, M. Consistent estimation of the expected brier score in general survival models with right-censored event times. Biometrical J 2006; 48(6): 1029–1040. Google Scholar | Crossref | Medline | ISI |
| 36. | Rosthoj, S, Keiding, N. Explained variation and predictive accuracy in general parametric statistical models: the role of model misspecification. Life-time Data Anal 2004; 10(4): 461–472. Google Scholar | Crossref | Medline | ISI |
| 37. | Gerds, TA, Schumacher, M. Efrontype measures of prediction error for survival analysis. Biometrics 2007; 63(4): 1283–1287. Google Scholar | Crossref | Medline | ISI |
| 38. | Pickles, T, Kim-Sing, C, Morris, W. Evaluation of the Houston biochemical relapse definition in men treated with prolonged neoadjuvant and adjuvant androgen ablation and assessment of followup lead-time bias. Int J Radiat Oncol Biol Phys 2003; 57: 1118–1118. Google Scholar | Crossref | ISI |
